BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB004F06SP1|AL425276
(844 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1554 0.0
>3x_Contig1788
Length = 28493
Score = 1554 bits (771), Expect = 0.0
Identities = 818/845 (96%), Gaps = 2/845 (0%)
Strand = Plus / Minus
Query: 1 gatcatgcagcgcatgattacgcakt-atcatcaagaagttccacgctattatgttagat 59
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 13828 gatcatgcagcgcatgattacgcagttatcatcaagaagttccacgctattatgttagat 13769
Query: 60 acasaataaaaacacaaggccttaatttaagaattcagttagttttttcatacatatgaa 119
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13768 acagaataaaaacacaaggccttaatttaagaattcagttagttttttcatacatatgag 13709
Query: 120 ataaatataaatmaasagtttattaatatttcccgtgatacaaggaaaacataaaggtca 179
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13708 ataaatataaataaagagtttattaatatttcccgtgatacaaggaaaacataaaggtca 13649
Query: 180 ctcttcttagtatcaaatgaatatatcagtaggttatttcagacaggattaattataata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13648 ctcttcttagtatcaaatgaatatatcagtaggttatttcagacaggattaattataata 13589
Query: 240 atttgatgttttttttcaggtttcgatatagaaagtagagtgttgaattttttttttagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13588 atttgatgttttttttcaggtttcgatatagaaagtagagtgttgaattttttttttagg 13529
Query: 300 atgacttgaataccgcaatttccagattacctcaagagaaagtcttgatggttaamatgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13528 atgacttgaataccgcaatttccagattacctcaagagaaagtcttgatggttaaaatgt 13469
Query: 360 attcaattgctcaccagtaaatsacagtatcataaatmaggacattgaactcatattttt 419
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 13468 attcaattgctcaccagtaaatgacagtatcataaataaggacattgaactcatattttt 13409
Query: 420 gtttcgacgaataatgagcgagattttgatttatttcgatttascctaaattttcaaata 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13408 gtttcgacgaataatgagcgagattttgatttatttcgatttagcctaaattttcaaata 13349
Query: 480 tcatttggaattaaaamatacattatgttcattaaatgtattgmtcttgaggagctgtga 539
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13348 tcatttggaattagaaaatacattatgttcattaaatgtattgatcttgaggagctgtga 13289
Query: 540 cagascsaaamatcgaatgcsccagtcaacaccctagactttagtccaaaacagtaaaat 599
|||| | ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 13288 cagagcgaaaaatcgaatgcgccagtaaacaccctagactttagtccaaaacagtaaaat 13229
Query: 600 attgatatamatcgatcgtsacamatttctttttttggsggaatatacacacatgcacat 659
||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||| | ||
Sbjct: 13228 attgatataaatcgatcgtgacaaatttctttttttgggggaatatacacacatg-aaat 13170
Query: 660 tmaactgtaacttattactcatcsagtgatatggttataacaactcaaaagtaaatgtta 719
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13169 taaactgtaacttattactcatcgagtgatatggttataacaactcaaaagtaaatgtta 13110
Query: 720 cagggagtaattctactcagtcgagtagaaaagagagaattgtttttagaatgaccgtcg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13109 cagggagtaattctactcagtcgagtagaaaagagagaattgtttttagaatgaccgtcg 13050
Query: 780 tgaaatgagaatataatataaaaasaattgttaaaatatcttaagactcggcttttagtt 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13049 tgaaatgagaatataatataaaaagaattgttaaaatatcttaagactcggcttttagtt 12990
Query: 840 tgatt 844
|||||
Sbjct: 12989 tgatt 12985
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8026
Number of Sequences: 1807
Number of extensions: 8026
Number of successful extensions: 172
Number of sequences better than 1.0e-20: 1
length of query: 844
length of database: 10,358,551
effective HSP length: 16
effective length of query: 828
effective length of database: 10,329,639
effective search space: 8552941092
effective search space used: 8552941092
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.3 bits)